Gene Expression
Nebulas
Gene Expression Nebulas| Download | Dataset ID | BioProject ID | Dataset Name | Species | Strategy | Sample Number | Biological Condition | Quality and Quantity | |||||||||
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| Baseline | Genetic | Phenotypic | Environmental | Spatial | Temporal | RNA Type | Median Mapping Quality | Median Coverage | Max Sequencing Length | Max Replicate# | |||||||
Download | Dataset ID | BioProject ID | Dataset Name | Species | Strategy | Sample Number | Biological Condition | Quality and Quantity | |||||||||
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Baseline | Genetic | Phenotypic | Environmental | Spatial | Temporal | RNA Type | Median Mapping Quality | Median Coverage | Max Sequencing Length | Max Replicate# | |||||||
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4-1BB Delineates Distinct Activation Status of Exhausted Tumor-Infiltrating CD8+ T Cells in Hepatocellular Carcinoma.
Kim HD, Park S, Jeong S, Lee YJ, Lee H, Kim CG, Kim KH, Hong SM, Lee JY, Kim S, Kim HK, Min BS, Chang JH, Ju YS, Shin EC, Song GW, Hwang S, Park SH.
Hepatology. 2019-10-18; 71 (3)
PMID: 31353502 DOI: 10.1002/hep.30881
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A distinct epigenetic profile distinguishes stenotic from non-inflamed fibroblasts in the ileal mucosa of Crohn's disease patients.
Li Yim AYF, de Bruyn JR, Duijvis NW, Sharp C, Ferrero E, de Jonge WJ, Wildenberg ME, Mannens MMAM, Buskens CJ, D'Haens GR, Henneman P, Te Velde AA.
PLoS One. 2018-12-27; 13 (12)
PMID: 30589872 DOI: 10.1371/journal.pone.0209656
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A high-resolution temporal atlas of the SARS-CoV-2 translatome and transcriptome.
Kim D, Kim S, Park J, Chang HR, Chang J, Ahn J, Park H, Park J, Son N, Kang G, Kim J, Kim K, Park MS, Kim YK, Baek D.
Nat Commun. 2021-08-25; 12 (1)
PMID: 34433827 DOI: 10.1038/s41467-021-25361-5
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A multitask clustering approach for single-cell RNA-seq analysis in Recessive Dystrophic Epidermolysis Bullosa.
Zhang H, Lee CAA, Li Z, Garbe JR, Eide CR, Petegrosso R, Kuang R, Tolar J.
PLoS Comput Biol. 2018-04-09; 14 (4)
PMID: 29630593 DOI: 10.1371/journal.pcbi.1006053
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A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis.
Yoo S, Wang W, Wang Q, Fiel MI, Lee E, Hiotis SP, Zhu J.
BMC Med. 2017-12-07; 15 (1)
PMID: 29212479 DOI: 10.1186/s12916-017-0973-7
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A Primate lncRNA Mediates Notch Signaling during Neuronal Development by Sequestering miRNA.
Rani N, Nowakowski TJ, Zhou H, Godshalk SE, Lisi V, Kriegstein AR, Kosik KS.
Neuron. 2016-06-02; 90 (6)
PMID: 27263970 DOI: 10.1016/j.neuron.2016.05.005
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A radiogenomic dataset of non-small cell lung cancer.
Bakr S, Gevaert O, Echegaray S, Ayers K, Zhou M, Shafiq M, Zheng H, Benson JA, Zhang W, Leung ANC, Kadoch M, Hoang CD, Shrager J, Quon A, Rubin DL, Plevritis SK, Napel S.
Sci Data. 2018-10-16; 5
PMID: 30325352 DOI: 10.1038/sdata.2018.202
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A Randomized Phase IIb Trial of myo-Inositol in Smokers with Bronchial Dysplasia.
Lam S, Mandrekar SJ, Gesthalter Y, Allen Ziegler KL, Seisler DK, Midthun DE, Mao JT, Aubry MC, McWilliams A, Sin DD, Shaipanich T, Liu G, Johnson E, Bild A, Lenburg ME, Ionescu DN, Mayo J, Yi JE, Tazelaar H, Harmsen WS, Smith J, Spira AE, Beane J, Limburg PJ, Szabo E, Cancer Prevention Network.
Cancer Prev Res (Phila). 2016-09-22; 9 (12)
PMID: 27658890 DOI: 10.1158/1940-6207.capr-15-0254
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A single-cell atlas of entorhinal cortex from individuals with Alzheimer's disease reveals cell-type-specific gene expression regulation.
Grubman A, Chew G, Ouyang JF, Sun G, Choo XY, McLean C, Simmons RK, Buckberry S, Vargas-Landin DB, Poppe D, Pflueger J, Lister R, Rackham OJL, Petretto E, Polo JM.
Nat Neurosci. 2019-12-01; 22 (12)
PMID: 31768052 DOI: 10.1038/s41593-019-0539-4
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A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure.
Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM, Melton DA, Yanai I.
Cell Syst. 2016-09-22; 3 (4)
PMID: 27667365 DOI: 10.1016/j.cels.2016.08.011
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A specific low-density neutrophil population correlates with hypercoagulation and disease severity in hospitalized COVID-19 patients.
Morrissey SM, Geller AE, Hu X, Tieri D, Ding C, Klaes CK, Cooke EA, Woeste MR, Martin ZC, Chen O, Bush SE, Zhang HG, Cavallazzi R, Clifford SP, Chen J, Ghare S, Barve SS, Cai L, Kong M, Rouchka EC, McLeish KR, Uriarte SM, Watson CT, Huang J, Yan J.
JCI Insight. 2021-05-10; 6 (9)
PMID: 33986193 DOI: 10.1172/jci.insight.148435
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A survey of human brain transcriptome diversity at the single cell level.
Darmanis S, Sloan SA, Zhang Y, Enge M, Caneda C, Shuer LM, Hayden Gephart MG, Barres BA, Quake SR.
Proc Natl Acad Sci U S A. 2015-05-18; 112 (23)
PMID: 26060301 DOI: 10.1073/pnas.1507125112
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A Systems Analysis of the Relationships Between Anemia and Ischemic Stroke Rehabilitation Based on RNA-Seq Data.
Wang Y, Huang X, Liu J, Zhao X, Yu H, Cai Y.
Front Genet. 2019-05-24; 10
PMID: 31178893 DOI: 10.3389/fgene.2019.00456
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A virus-derived microRNA targets immune response genes during SARS-CoV-2 infection.
Singh M, Chazal M, Quarato P, Bourdon L, Malabat C, Vallet T, Vignuzzi M, van der Werf S, Behillil S, Donati F, Sauvonnet N, Nigro G, Bourgine M, Jouvenet N, Cecere G.
EMBO Rep. 2021-12-16; 23 (2)
PMID: 34914162 DOI: 10.15252/embr.202154341
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Aberrant Development Corrected in Adult-Onset Huntington's Disease iPSC-Derived Neuronal Cultures via WNT Signaling Modulation.
Smith-Geater C, Hernandez SJ, Lim RG, Adam M, Wu J, Stocksdale JT, Wassie BT, Gold MP, Wang KQ, Miramontes R, Kopan L, Orellana I, Joy S, Kemp PJ, Allen ND, Fraenkel E, Thompson LM.
Stem Cell Reports. 2020-02-27; 14 (3)
PMID: 32109367 DOI: 10.1016/j.stemcr.2020.01.015
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Activation of Interferon-Stimulated Transcriptomes and ACE2 Isoforms in Human Airway Epithelium Is Curbed by Janus Kinase Inhibitors.
Lee HK, Jung O, Hennighausen L.
Res Sq. 2020-12-11;
PMID: 33330857 DOI: 10.21203/rs.3.rs-119695/v1
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Activity of distinct growth factor receptor network components in breast tumors uncovers two biologically relevant subtypes.
Rahman M, MacNeil SM, Jenkins DF, Shrestha G, Wyatt SR, McQuerry JA, Piccolo SR, Heiser LM, Gray JW, Johnson WE, Bild AH.
Genome Med. 2017-04-26; 9 (1)
PMID: 28446242 DOI: 10.1186/s13073-017-0429-x
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Adaptive from Innate: Human IFN-γ+CD4+ T Cells Can Arise Directly from CXCL8-Producing Recent Thymic Emigrants in Babies and Adults.
Das A, Rouault-Pierre K, Kamdar S, Gomez-Tourino I, Wood K, Donaldson I, Mein CA, Bonnet D, Hayday AC, Gibbons DL.
J Immunol. 2017-07-28; 199 (5)
PMID: 28754679 DOI: 10.4049/jimmunol.1700551
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Adult Stem Cell-derived Complete Lung Organoid Models Emulate Lung Disease in COVID-19.
Tindle C, Fuller M, Fonseca A, Taheri S, Ibeawuchi SR, Beutler N, Katkar G, Claire A, Castillo V, Hernandez M, Russo H, Duran J, Crotty Alexander LE, Tipps A, Lin G, Thistlethwaite PA, Chattopadhyay R, Rogers TF, Sahoo D, Ghosh P, Das S.
bioRxiv. 2021-05-05;
PMID: 33106807 DOI: 10.1101/2020.10.17.344002
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Airway Smooth Muscle-Specific Transcriptomic Signatures of Glucocorticoid Exposure.
Kan M, Koziol-White C, Shumyatcher M, Johnson M, Jester W, Panettieri RA, Himes BE.
Am J Respir Cell Mol Biol. 2019-07-01; 61 (1)
PMID: 30694689 DOI: 10.1165/rcmb.2018-0385oc
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Alterations in the Transcriptional Programs of Myeloma Cells and the Microenvironment during Extramedullary Progression Affect Proliferation and Immune Evasion.
Ryu D, Kim SJ, Hong Y, Jo A, Kim N, Kim HJ, Lee HO, Kim K, Park WY.
Clin Cancer Res. 2019-09-26; 26 (4)
PMID: 31558476 DOI: 10.1158/1078-0432.ccr-19-0694
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An EZH2-NF-κB regulatory axis drives expression of pro-oncogenic gene signatures in triple negative breast cancer.
Dardis GJ, Wang J, Simon JM, Wang GG, Baldwin AS.
iScience. 2023-06-14; 26 (7)
PMID: 37416481 DOI: 10.1016/j.isci.2023.107115
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An Immuno-Cardiac Model for Macrophage-Mediated Inflammation in COVID-19 Hearts.
Yang L, Han Y, Jaffré F, Nilsson-Payant BE, Bram Y, Wang P, Zhu J, Zhang T, Redmond D, Houghton S, Uhl S, Borczuk A, Huang Y, Richardson C, Chandar V, Acklin JA, Lim JK, Chen Z, Xiang J, Ho DD, tenOever BR, Schwartz RE, Evans T, Chen S.
Circ Res. 2021-04-15; 129 (1)
PMID: 33853355 DOI: 10.1161/circresaha.121.319060
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An organoid-derived bronchioalveolar model for SARS-CoV-2 infection of human alveolar type II-like cells.
Lamers MM, van der Vaart J, Knoops K, Riesebosch S, Breugem TI, Mykytyn AZ, Beumer J, Schipper D, Bezstarosti K, Koopman CD, Groen N, Ravelli RBG, Duimel HQ, Demmers JAA, Verjans GMGM, Koopmans MPG, Muraro MJ, Peters PJ, Clevers H, Haagmans BL.
EMBO J. 2021-01-11; 40 (5)
PMID: 33283287 DOI: 10.15252/embj.2020105912
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Analysis of Bulk RNA Sequencing Data Reveals Novel Transcription Factors Associated With Immune Infiltration Among Multiple Cancers.
Liu L, Zhao Q, Cheng C, Yi J, Sun H, Wang Q, Quan W, Xue Y, Sun L, Cong X, Zhang Y.
Front Immunol. 2021-08-20; 12
PMID: 34489925 DOI: 10.3389/fimmu.2021.644350
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Androgen Signaling Regulates SARS-CoV-2 Receptor Levels and Is Associated with Severe COVID-19 Symptoms in Men.
Samuel RM, Majd H, Richter MN, Ghazizadeh Z, Zekavat SM, Navickas A, Ramirez JT, Asgharian H, Simoneau CR, Bonser LR, Koh KD, Garcia-Knight M, Tassetto M, Sunshine S, Farahvashi S, Kalantari A, Liu W, Andino R, Zhao H, Natarajan P, Erle DJ, Ott M, Goodarzi H, Fattahi F.
Cell Stem Cell. 2020-11-17; 27 (6)
PMID: 33232663 DOI: 10.1016/j.stem.2020.11.009
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Application of single-cell RNA sequencing in optimizing a combinatorial therapeutic strategy in metastatic renal cell carcinoma.
Kim KT, Lee HW, Lee HO, Song HJ, Jeong da E, Shin S, Kim H, Shin Y, Nam DH, Jeong BC, Kirsch DG, Joo KM, Park WY.
Genome Biol. 2016-04-29; 17
PMID: 27139883 DOI: 10.1186/s13059-016-0945-9
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Aryl Hydrocarbon Receptor Controls Monocyte Differentiation into Dendritic Cells versus Macrophages.
Goudot C, Coillard A, Villani AC, Gueguen P, Cros A, Sarkizova S, Tang-Huau TL, Bohec M, Baulande S, Hacohen N, Amigorena S, Segura E.
Immunity. 2017-09-01; 47 (3)
PMID: 28930664 DOI: 10.1016/j.immuni.2017.08.016
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Assembly of functionally integrated human forebrain spheroids.
Birey F, Andersen J, Makinson CD, Islam S, Wei W, Huber N, Fan HC, Metzler KRC, Panagiotakos G, Thom N, O'Rourke NA, Steinmetz LM, Bernstein JA, Hallmayer J, Huguenard JR, Paşca SP.
Nature. 2017-04-26; 545 (7652)
PMID: 28445465 DOI: 10.1038/nature22330
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Assessing similarity to primary tissue and cortical layer identity in induced pluripotent stem cell-derived cortical neurons through single-cell transcriptomics.
Handel AE, Chintawar S, Lalic T, Whiteley E, Vowles J, Giustacchini A, Argoud K, Sopp P, Nakanishi M, Bowden R, Cowley S, Newey S, Akerman C, Ponting CP, Cader MZ.
Hum Mol Genet. 2016-01-05; 25 (5)
PMID: 26740550 DOI: 10.1093/hmg/ddv637
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ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways.
Shen Y, Rahman M, Piccolo SR, Gusenleitner D, El-Chaar NN, Cheng L, Monti S, Bild AH, Johnson WE.
Bioinformatics. 2015-01-22; 31 (11)
PMID: 25617415 DOI: 10.1093/bioinformatics/btv031
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Association Between Response to Etrolizumab and Expression of Integrin αE and Granzyme A in Colon Biopsies of Patients With Ulcerative Colitis.
Tew GW, Hackney JA, Gibbons D, Lamb CA, Luca D, Egen JG, Diehl L, Eastham Anderson J, Vermeire S, Mansfield JC, Feagan BG, Panes J, Baumgart DC, Schreiber S, Dotan I, Sandborn WJ, Kirby JA, Irving PM, De Hertogh G, Van Assche GA, Rutgeerts P, O'Byrne S, Hayday A, Keir ME.
Gastroenterology. 2015-10-30; 150 (2)
PMID: 26522261 DOI: 10.1053/j.gastro.2015.10.041
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Associations of creatinine/cystatin C ratio and postoperative pulmonary complications in elderly patients undergoing off-pump coronary artery bypass surgery: a retrospective study.
Kim HJ, Kim HB, Kim HY, Shim JK, Lee C, Kwak YL.
Sci Rep. 2021-08-19; 11 (1)
PMID: 34413410 DOI: 10.1038/s41598-021-96442-0
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Atopic Dermatitis Is an IL-13-Dominant Disease with Greater Molecular Heterogeneity Compared to Psoriasis.
Tsoi LC, Rodriguez E, Degenhardt F, Baurecht H, Wehkamp U, Volks N, Szymczak S, Swindell WR, Sarkar MK, Raja K, Shao S, Patrick M, Gao Y, Uppala R, Perez White BE, Getsios S, Harms PW, Maverakis E, Elder JT, Franke A, Gudjonsson JE, Weidinger S.
J Invest Dermatol. 2019-01-11; 139 (7)
PMID: 30641038 DOI: 10.1016/j.jid.2018.12.018
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B cell-specific XIST complex enforces X-inactivation and restrains atypical B cells.
Yu B, Qi Y, Li R, Shi Q, Satpathy AT, Chang HY.
Cell. 2021-03-17; 184 (7)
PMID: 33735607 DOI: 10.1016/j.cell.2021.02.015
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Batch effects and the effective design of single-cell gene expression studies.
Tung PY, Blischak JD, Hsiao CJ, Knowles DA, Burnett JE, Pritchard JK, Gilad Y.
Sci Rep. 2017-01-03; 7
PMID: 28045081 DOI: 10.1038/srep39921
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Blood platelet RNA profiles do not enable for nivolumab response prediction at baseline in patients with non-small cell lung cancer.
Muller M, Best MG, van der Noort V, Hiltermann TJN, Niemeijer AN, Post E, Sol N, In 't Veld SGJG, Nogarede T, Visser L, Schouten RD, van den Broek D, Hummelink K, Monkhorst K, de Langen AJ, Schuuring E, Smit EF, Groen HJM, Wurdinger T, van den Heuvel MM.
Tumour Biol. 2023-05-26;
PMID: 37270827 DOI: 10.3233/tub-220037
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BRN2 suppresses apoptosis, reprograms DNA damage repair, and is associated with a high somatic mutation burden in melanoma.
Herbert K, Binet R, Lambert JP, Louphrasitthiphol P, Kalkavan H, Sesma-Sanz L, Robles-Espinoza CD, Sarkar S, Suer E, Andrews S, Chauhan J, Roberts ND, Middleton MR, Gingras AC, Masson JY, Larue L, Falletta P, Goding CR.
Genes Dev. 2019-02-25; 33 (5-6)
PMID: 30804224 DOI: 10.1101/gad.314633.118
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Bronchial extracellular matrix from COPD patients induces altered gene expression in repopulated primary human bronchial epithelial cells.
Hedström U, Hallgren O, Öberg L, DeMicco A, Vaarala O, Westergren-Thorsson G, Zhou X.
Sci Rep. 2018-02-22; 8 (1)
PMID: 29472603 DOI: 10.1038/s41598-018-21727-w
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CD177, a specific marker of neutrophil activation, is associated with coronavirus disease 2019 severity and death.
Lévy Y, Wiedemann A, Hejblum BP, Durand M, Lefebvre C, Surénaud M, Lacabaratz C, Perreau M, Foucat E, Déchenaud M, Tisserand P, Blengio F, Hivert B, Gauthier M, Cervantes-Gonzalez M, Bachelet D, Laouénan C, Bouadma L, Timsit JF, Yazdanpanah Y, Pantaleo G, Hocini H, Thiébaut R, French COVID cohort study group.
iScience. 2021-06-10; 24 (7)
PMID: 34127958 DOI: 10.1016/j.isci.2021.102711
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Cell fixation and preservation for droplet-based single-cell transcriptomics.
Alles J, Karaiskos N, Praktiknjo SD, Grosswendt S, Wahle P, Ruffault PL, Ayoub S, Schreyer L, Boltengagen A, Birchmeier C, Zinzen R, Kocks C, Rajewsky N.
BMC Biol. 2017-05-19; 15 (1)
PMID: 28526029 DOI: 10.1186/s12915-017-0383-5
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Cell-specific proteome analyses of human bone marrow reveal molecular features of age-dependent functional decline.
Hennrich ML, Romanov N, Horn P, Jaeger S, Eckstein V, Steeples V, Ye F, Ding X, Poisa-Beiro L, Lai MC, Lang B, Boultwood J, Luft T, Zaugg JB, Pellagatti A, Bork P, Aloy P, Gavin AC, Ho AD.
Nat Commun. 2018-10-01; 9 (1)
PMID: 30275468 DOI: 10.1038/s41467-018-06353-4
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Cellular senescence mediates fibrotic pulmonary disease.
Schafer MJ, White TA, Iijima K, Haak AJ, Ligresti G, Atkinson EJ, Oberg AL, Birch J, Salmonowicz H, Zhu Y, Mazula DL, Brooks RW, Fuhrmann-Stroissnigg H, Pirtskhalava T, Prakash YS, Tchkonia T, Robbins PD, Aubry MC, Passos JF, Kirkland JL, Tschumperlin DJ, Kita H, LeBrasseur NK.
Nat Commun. 2017-02-23; 8
PMID: 28230051 DOI: 10.1038/ncomms14532
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Cerebral organoids at the air-liquid interface generate diverse nerve tracts with functional output.
Giandomenico SL, Mierau SB, Gibbons GM, Wenger LMD, Masullo L, Sit T, Sutcliffe M, Boulanger J, Tripodi M, Derivery E, Paulsen O, Lakatos A, Lancaster MA.
Nat Neurosci. 2019-03-18; 22 (4)
PMID: 30886407 DOI: 10.1038/s41593-019-0350-2
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Changes in macrophage transcriptome associate with systemic sclerosis and mediate GSDMA contribution to disease risk.
Moreno-Moral A, Bagnati M, Koturan S, Ko JH, Fonseca C, Harmston N, Game L, Martin J, Ong V, Abraham DJ, Denton CP, Behmoaras J, Petretto E.
Ann Rheum Dis. 2018-01-17; 77 (4)
PMID: 29348297 DOI: 10.1136/annrheumdis-2017-212454
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Charting cellular identity during human in vitro β-cell differentiation.
Veres A, Faust AL, Bushnell HL, Engquist EN, Kenty JH, Harb G, Poh YC, Sintov E, Gürtler M, Pagliuca FW, Peterson QP, Melton DA.
Nature. 2019-05-08; 569 (7756)
PMID: 31068696 DOI: 10.1038/s41586-019-1168-5
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Chromatin Accessibility Landscape in Human Early Embryos and Its Association with Evolution.
Gao L, Wu K, Liu Z, Yao X, Yuan S, Tao W, Yi L, Yu G, Hou Z, Fan D, Tian Y, Liu J, Chen ZJ, Liu J.
Cell. 2018-03-08; 173 (1)
PMID: 29526463 DOI: 10.1016/j.cell.2018.02.028
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Chromatin state dynamics confers specific therapeutic strategies in enhancer subtypes of colorectal cancer.
Orouji E, Raman AT, Singh AK, Sorokin A, Arslan E, Ghosh AK, Schulz J, Terranova C, Jiang S, Tang M, Maitituoheti M, Callahan SC, Barrodia P, Tomczak K, Jiang Y, Jiang Z, Davis JS, Ghosh S, Lee HM, Reyes-Uribe L, Chang K, Liu Y, Chen H, Azhdarinia A, Morris J, Vilar E, Carmon KS, Kopetz SE, Rai K.
Gut. 2021-05-31; 71 (5)
PMID: 34059508 DOI: 10.1136/gutjnl-2020-322835
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Chromosome 1q21.3 amplification is a trackable biomarker and actionable target for breast cancer recurrence.
Goh JY, Feng M, Wang W, Oguz G, Yatim SMJM, Lee PL, Bao Y, Lim TH, Wang P, Tam WL, Kodahl AR, Lyng MB, Sarma S, Lin SY, Lezhava A, Yap YS, Lim AST, Hoon DSB, Ditzel HJ, Lee SC, Tan EY, Yu Q.
Nat Med. 2017-09-25; 23 (11)
PMID: 28967919 DOI: 10.1038/nm.4405
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Circular RNA circYPEL2: A Novel Biomarker in Cervical Cancer.
Zhang X, Yang S, Chen W, Dong X, Zhang R, Ye H, Mei X, Liu H, Fang Y, He C.
Genes (Basel). 2021-12-23; 13 (1)
PMID: 35052380 DOI: 10.3390/genes13010038
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Clinico-histopathologic and single nuclei RNA sequencing insights into cardiac injury and microthrombi in critical COVID-19.
Brener MI, Hulke ML, Fukuma N, Golob S, Zilinyi RS, Zhou Z, Tzimas C, Russo I, McGroder C, Pfeiffer RD, Chong A, Zhang G, Burkhoff D, Leon MB, Maurer MS, Moses JW, Uhlemann AC, Hibshoosh H, Uriel N, Szabolcs MJ, Redfors B, Marboe CC, Baldwin MR, Tucker NR, Tsai EJ.
JCI Insight. 2021-12-14;
PMID: 34905515 DOI: 10.1172/jci.insight.154633
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Clofazimine is a broad-spectrum coronavirus inhibitor that antagonizes SARS-CoV-2 replication in primary human cell culture and hamsters.
Yuan S, Yin X, Meng X, Chan J, Ye ZW, Riva L, Pache L, Chan CC, Lai PM, Chan C, Poon V, Matsunaga N, Pu Y, Yuen CK, Cao J, Liang R, Tang K, Sheng L, Du Y, Xu W, Sze KH, Zhang J, Chu H, Kok KH, To K, Jin DY, Sun R, Chanda S, Yuen KY.
Res Sq. 2020-10-07;
PMID: 33052331 DOI: 10.21203/rs.3.rs-86169/v1
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Collagen synthesis disruption and downregulation of core elements of TGF-β, Hippo, and Wnt pathways in keratoconus corneas.
Kabza M, Karolak JA, Rydzanicz M, Szcześniak MW, Nowak DM, Ginter-Matuszewska B, Polakowski P, Ploski R, Szaflik JP, Gajecka M.
Eur J Hum Genet. 2017-02-01; 25 (5)
PMID: 28145428 DOI: 10.1038/ejhg.2017.4
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Comparative single-cell RNA sequencing (scRNA-seq) reveals liver metastasis-specific targets in a patient with small intestinal neuroendocrine cancer.
Rao M, Oh K, Moffitt R, Thompson P, Li J, Liu J, Sasson A, Georgakis G, Kim J, Choi M, Powers S.
Cold Spring Harb Mol Case Stud. 2020-04-01; 6 (2)
PMID: 32054662 DOI: 10.1101/mcs.a004978
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Comprehensive analysis of metastatic gastric cancer tumour cells using single-cell RNA-seq.
Wang B, Zhang Y, Qing T, Xing K, Li J, Zhen T, Zhu S, Zhan X.
Sci Rep. 2021-01-13; 11 (1)
PMID: 33441952 DOI: 10.1038/s41598-020-80881-2
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Comprehensive transcriptome profiling of Taiwanese colorectal cancer implicates an ethnic basis for pathogenesis.
Wu SM, Tsai WS, Chiang SF, Lai YH, Ma CP, Wang JH, Lin J, Lu PS, Yang CY, Tan BC, Liu H.
Sci Rep. 2020-03-11; 10 (1)
PMID: 32161294 DOI: 10.1038/s41598-020-61273-y
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Controlled modelling of human epiblast and amnion development using stem cells.
Zheng Y, Xue X, Shao Y, Wang S, Esfahani SN, Li Z, Muncie JM, Lakins JN, Weaver VM, Gumucio DL, Fu J.
Nature. 2019-09-11; 573 (7774)
PMID: 31511693 DOI: 10.1038/s41586-019-1535-2
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Convalescent COVID-19 Patients Without Comorbidities Display Similar Immunophenotypes Over Time Despite Divergent Disease Severities.
Chu CF, Sabath F, Fibi-Smetana S, Sun S, Öllinger R, Noeßner E, Chao YY, Rinke L, Winheim E, Rad R, Krug AB, Taher L, Zielinski CE.
Front Immunol. 2021-08-19; 12
PMID: 34867933 DOI: 10.3389/fimmu.2021.601080
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Copy number loss of the interferon gene cluster in melanomas is linked to reduced T cell infiltrate and poor patient prognosis.
Linsley PS, Speake C, Whalen E, Chaussabel D.
PLoS One. 2014-10-14; 9 (10)
PMID: 25314013 DOI: 10.1371/journal.pone.0109760
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COX-2 mediates tumor-stromal prolactin signaling to initiate tumorigenesis.
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Severe COVID-19 Is Characterized by an Impaired Type I Interferon Response and Elevated Levels of Arginase Producing Granulocytic Myeloid Derived Suppressor Cells.
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Front Immunol. 2021-07-14; 12
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Nat Commun. 2019-07-26; 10 (1)
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Single cell sequencing reveals heterogeneity within ovarian cancer epithelium and cancer associated stromal cells.
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Gynecol Oncol. 2017-01-19; 144 (3)
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Hum Mol Genet. 2020-05-01; 29 (7)
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Mol Cell. 2017-06-29; 67 (1)
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Nat Cancer. 2020-02-17; 1
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Immunity. 2019-08-29; 51 (3)
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Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Patterns.
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Cell. 2017-09-28; 171 (2)
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Genome Med. 2019-01-23; 11 (1)
PMID: 30674341 DOI: 10.1186/s13073-019-0615-0
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Front Genet. 2020-01-01; 11
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